Right now I have a '96 Saturn SC2, It's an auto (But I can drive a stick.)
I'm getting a newer Acura Integra, and was wondering if I should get a stick or Auto.

StickShift.
Sticks are more reliable
-cheaper to fix
-better gas mileage
-higher top speed
-faster acceleration
-lighter weight
-more fun to drive.

stick, definitely. better milage, more control over the car, no loss of power thru the torque converter, heal/toe shifting, etc.

if you are into hooking up the car you should get standard.. but if you are not you should get an auto because when youre tired from a long day of work or driving outta state auto is a good decision... they both are 4 cycl save gas

I have a 94 Acura Integra that's manual. I would suggest that you should get a manual simply because there more fun : ) but other than the fun part it will save you on MPG, and in bad weather you will have more control over you car.